If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ), 'gf_id' => 'HOM05D000631', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000631' ), 'data_identifier' => 'HOM05D000631', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000631', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '901', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01600' => 'bna', 'A02p02490' => 'bna', 'A02p23260' => 'bna', 'A02p43070' => 'bna', 'A03p06600' => 'bna', 'A03p32430' => 'bna', 'A05p15350' => 'bna', 'A05p44440' => 'bna', 'A06p30590' => 'bna', 'A07p27180' => 'bna', 'A07p34360' => 'bna', 'A07p44450' => 'bna', 'A09p38870' => 'bna', 'A10p24100' => 'bna', 'Aa31LG11G15200' => 'aar', 'Aa31LG1G17930' => 'aar', 'Aa31LG4G1650' => 'aar', 'Aa31LG5G10790' => 'aar', 'Aa31LG7G9500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4784' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4785' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1526' => 'aag', 'Actinidia06607' => 'ach', 'Actinidia08120' => 'ach', 'Actinidia08121' => 'ach', 'Actinidia11913' => 'ach', 'Actinidia16215' => 'ach', 'Actinidia18439' => 'ach', 'Actinidia20066' => 'ach', 'Actinidia27810' => 'ach', 'Actinidia28660' => 'ach', 'Actinidia35781' => 'ach', 'Actinidia36132' => 'ach', 'Ah.02g130280' => 'amhyb', 'Ah.03g133440' => 'amhyb', 'Ah.06g190890' => 'amhyb', 'AL1G40390' => 'aly', 'AL1G61800' => 'aly', 'AL2G26540' => 'aly', 'AL2G39990' => 'aly', 'AL3G10500' => 'aly', 'AL6G25140' => 'aly', 'AL8G34660' => 'aly', 'AL8G41230' => 'aly', 'Aqoxy1G01379' => 'aox', 'Aqoxy3G01285' => 'aox', 'Aqoxy5G00652' => 'aox', 'Aqoxy5G02299' => 'aox', 'Aqoxy5G03691' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XMI5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44VHKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483GQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HYI17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP6VIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D38J11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCQ16M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ELNY98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRX424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9ZWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PK90TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KF7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RT7ELD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6F2TX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9FD46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U1B62V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB7VDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIU8IP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ9YR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7V7V' => 'arhy', 'AT1G24545' => 'ath', 'AT1G67800' => 'ath', 'AT1G79380' => 'ath', 'AT3G01650' => 'ath', 'AT5G14420' => 'ath', 'AT5G63970' => 'ath', 'ATR0199G016' => 'atr', 'ATR0751G117' => 'atr', 'ATR0751G272' => 'atr', 'ATR0776G065' => 'atr', 'Atru.chr1.37' => 'acertr', 'Atru.chr1.38' => 'acertr', 'Atru.chr11.2173' => 'acertr', 'Atru.chr4.963' => 'acertr', 'Atru.chr6.2440' => 'acertr', 'Atru.chr9.2615' => 'acertr', 'AUR62000498' => 'cqu', 'AUR62005510' => 'cqu', 'AUR62006844' => 'cqu', 'AUR62024232' => 'cqu', 'AUR62028434' => 'cqu', 'AUR62041030' => 'cqu', 'BcaB01g05112' => 'bca', 'BcaB01g06326' => 'bca', 'BcaB01g06374' => 'bca', 'BcaB02g07211' => 'bca', 'BcaB02g08677' => 'bca', 'BcaB03g15156' => 'bca', 'BcaB04g17147' => 'bca', 'BcaB07g29711' => 'bca', 'BcaB07g33309' => 'bca', 'BcaB08g36985' => 'bca', 'BcaB08g37375' => 'bca', 'BcaC01g02535' => 'bca', 'BcaC01g02959' => 'bca', 'BcaC01g04531' => 'bca', 'BcaC01g04532' => 'bca', 'BcaC03g13487' => 'bca', 'BcaC03g13489' => 'bca', 'BcaC03g13492' => 'bca', 'BcaC03g15040' => 'bca', 'BcaC03g15041' => 'bca', 'BcaC03g16300' => 'bca', 'BcaC03g17467' => 'bca', 'BcaC03g17474' => 'bca', 'BcaC03g18234' => 'bca', 'BcaC05g26512' => 'bca', 'BcaC05g26514' => 'bca', 'BcaC05g26707' => 'bca', 'BcaC05g29236' => 'bca', 'BcaC05g30418' => 'bca', 'BcaC05g30457' => 'bca', 'BcaC07g38310' => 'bca', 'BcaC08g45361' => 'bca', 'BcaC08g46207' => 'bca', 'BcaC08g47497' => 'bca', 'BcaNung03156' => 'bca', 'BcaNung03159' => 'bca', 'BolC2t06619H' => 'bol', 'BolC2t08663H' => 'bol', 'BolC2t10119H' => 'bol', 'BolC2t12377H' => 'bol', 'BolC3t13263H' => 'bol', 'BolC3t16217H' => 'bol', 'BolC3t18497H' => 'bol', 'BolC4t26631H' => 'bol', 'BolC5t31290H' => 'bol', 'BolC5t34178H' => 'bol', 'BolC6t35205H' => 'bol', 'BolC6t38154H' => 'bol', 'BolC6t39207H' => 'bol', 'BolC6t40344H' => 'bol', 'BolC9t59111H' => 'bol', 'BraA02t05219Z' => 'bra', 'BraA02t09228Z' => 'bra', 'BraA03t09992Z' => 'bra', 'BraA03t12413Z' => 'bra', 'BraA05t20453Z' => 'bra', 'BraA05t21395Z' => 'bra', 'BraA05t23212Z' => 'bra', 'BraA06t25184Z' => 'bra', 'BraA06t26011Z' => 'bra', 'BraA07t30362Z' => 'bra', 'BraA07t31066Z' => 'bra', 'BraA07t31954Z' => 'bra', 'BraA09t39394Z' => 'bra', 'BraA10t44475Z' => 'bra', 'C02p06740' => 'bna', 'C02p54330' => 'bna', 'C02p63040' => 'bna', 'C03p07630' => 'bna', 'C03p39490' => 'bna', 'C03p62370' => 'bna', 'C03p63820' => 'bna', 'C03p71180' => 'bna', 'C04p50330' => 'bna', 'C05p25620' => 'bna', 'C05p43550' => 'bna', 'C05p55100' => 'bna', 'C06p00680' => 'bna', 'C06p29930' => 'bna', 'C06p42170' => 'bna', 'C06p53260' => 'bna', 'C07p27850' => 'bna', 'C07p58280' => 'bna', 'C08p10600' => 'bna', 'C09p62740' => 'bna', 'C09p75020' => 'bna', 'CAN.G1259.3' => 'can', 'CAN.G126.86' => 'can', 'CAN.G1310.9' => 'can', 'CAN.G4295.1' => 'can', 'CAN.G473.33' => 'can', 'CANSAT01G0236' => 'cansat', 'CANSAT01G1932' => 'cansat', 'CANSAT25G2869' => 'cansat', 'CANSAT56G1845' => 'cansat', 'CANSAT56G4134' => 'cansat', 'CANSAT64G0184' => 'cansat', 'CANSAT80G0556' => 'cansat', 'CARHR026540' => 'chi', 'CARHR060430' => 'chi', 'CARHR073030' => 'chi', 'CARHR075270' => 'chi', 'CARHR096010' => 'chi', 'CARHR198890' => 'chi', 'CARHR277880' => 'chi', 'CARHR277890' => 'chi', 'Carub.0001s2556' => 'cru', 'Carub.0002s1425' => 'cru', 'Carub.0002s2624' => 'cru', 'Carub.0003s0041' => 'cru', 'Carub.0006s1260' => 'cru', 'Carub.0008s2475' => 'cru', 'Ca_03186_v3' => 'car', 'Ca_04379_v3' => 'car', 'Ca_16117_v3' => 'car', 'Ca_16975_v3' => 'car', 'Ca_17788_v3' => 'car', 'Ca_22980_v3' => 'car', 'Ca_22982_v3' => 'car', 'Ca_25132_v3' => 'car', 'Ca_26273_v3' => 'car', 'CBR_g21218' => 'cbr', 'CBR_g29648' => 'cbr', 'CBR_g31544' => 'cbr', 'CBR_g31548' => 'cbr', 'CBR_g31551' => 'cbr', 'CBR_g31554' => 'cbr', 'CBR_g31556' => 'cbr', 'CBR_g31557' => 'cbr', 'CBR_g31559' => 'cbr', 'CBR_g3706' => 'cbr', 'Cc04_g11140' => 'ccan', 'Cc07_g00090' => 'ccan', 'Cc07_g18890' => 'ccan', 'Cc10_g14580' => 'ccan', 'Cc11_g16030' => 'ccan', 'CDE04G2997' => 'cde', 'CDE07G0178' => 'cde', 'CDE07G1546' => 'cde', 'CDE10G0034' => 'cde', 'CDE10G0733' => 'cde', 'CDE10G0942' => 'cde', 'CDE12G0111' => 'cde', 'CDE12G0124' => 'cde', 'Cfa000012' => 'cfa', 'Cfa002920' => 'cfa', 'Cfa009243' => 'cfa', 'Cfa017758' => 'cfa', 'Ciclev10001203m.g' => 'ccl', 'Ciclev10005036m.g' => 'ccl', 'Ciclev10015247m.g' => 'ccl', 'Ciclev10020205m.g' => 'ccl', 'Ciclev10020806m.g' => 'ccl', 'Ciclev10031509m.g' => 'ccl', 'CiPaw.03G046400' => 'cil', 'CiPaw.03G119400' => 'cil', 'CiPaw.04G080300' => 'cil', 'CiPaw.04G080500' => 'cil', 'CiPaw.04G080600' => 'cil', 'CiPaw.05G168100' => 'cil', 'CiPaw.05G177700' => 'cil', 'CiPaw.06G073500' => 'cil', 'CiPaw.09G111000' => 'cil', 'CiPaw.11G015400' => 'cil', 'CiPaw.12G032700' => 'cil', 'CiPaw.15G112100' => 'cil', 'CiPaw.15G112300' => 'cil', 'CiPaw.15G112500' => 'cil', 'ClCG01G015160' => 'cla', 'ClCG01G021090' => 'cla', 'ClCG02G018800' => 'cla', 'ClCG05G026040' => 'cla', 'ClCG06G017480' => 'cla', 'ClCG09G019410' => 'cla', 'ClCG10G013740' => 'cla', 'COL.COLO4_03546' => 'col', 'COL.COLO4_23498' => 'col', 'COL.COLO4_29187' => 'col', 'Cpa.g.c34220' => 'cpa', 'Cpa.g.sc130.73' => 'cpa', 'Cpa.g.sc27.203' => 'cpa', 'Cpa.g.sc33.64' => 'cpa', 'Cpa.g.sc4.18' => 'cpa', 'Cpa.g.sc42.177' => 'cpa', 'Cpa.g.sc42.178' => 'cpa', 'Cre09.g396475' => 'cre', 'Cre09.g399550' => 'cre', 'Cre09.g399915' => 'cre', 'Cre12.g508853' => 'cre', 'CsaV3_1G000970' => 'csa', 'CsaV3_1G000980' => 'csa', 'CsaV3_3G042930' => 'csa', 'CsaV3_5G017090' => 'csa', 'CsaV3_5G026990' => 'csa', 'CsaV3_5G030810' => 'csa', 'CsaV3_6G013390' => 'csa', 'CsaV3_6G018780' => 'csa', 'CsaV3_6G021440' => 'csa', 'CsaV3_6G041270' => 'csa', 'CsaV3_6G048090' => 'csa', 'CSS0003362' => 'camsi', 'CSS0005638' => 'camsi', 'CSS0010385' => 'camsi', 'CSS0016965' => 'camsi', 'CSS0019953' => 'camsi', 'CSS0021794' => 'camsi', 'CSS0021981' => 'camsi', 'CSS0030351' => 'camsi', 'CSS0036775' => 'camsi', 'CSS0038228' => 'camsi', 'CSS0042917' => 'camsi', 'CSS0044053' => 'camsi', 'CSS0046595' => 'camsi', 'CSS0049533' => 'camsi', 'DCAR_007457' => 'dca', 'DCAR_011266' => 'dca', 'DCAR_011894' => 'dca', 'DCAR_013712' => 'dca', 'DCAR_021738' => 'dca', 'DCAR_026194' => 'dca', 'DCAR_030827' => 'dca', 'Dinv04384' => 'din', 'Dinv07132' => 'din', 'Dinv10219' => 'din', 'Dinv11044' => 'din', 'Dinv14745' => 'din', 'Dinv15204' => 'din', 'Dinv25720' => 'din', 'Dinv33418' => 'din', 'Dinv34361' => 'din', 'Dinv38505' => 'din', 'Dinv42455' => 'din', 'Duzib068G0978' => 'dzi', 'Duzib147G1322' => 'dzi', 'Duzib187G0569' => 'dzi', 'Duzib187G1982' => 'dzi', 'Duzib205G1735' => 'dzi', 'Duzib213G0984' => 'dzi', 'Duzib248G1612' => 'dzi', 'Duzib251G0598' => 'dzi', 'Duzib264G0677' => 'dzi', 'Duzib268G0104' => 'dzi', 'Duzib268G0541' => 'dzi', 'ECA232G0637' => 'eca', 'ECA234G0503' => 'eca', 'ECA234G1393' => 'eca', 'ECA234G4098' => 'eca', 'ECA238G3176' => 'eca', 'ECA238G3600' => 'eca', 'ECA246G2544' => 'eca', 'ECA246G3363' => 'eca', 'ECA247G1548' => 'eca', 'EL10Ac4g09603' => 'bvu', 'EL10Ac6g14108' => 'bvu', 'EL10As2g23160' => 'bvu', 'Eucgr.B00181' => 'egr', 'Eucgr.B03245' => 'egr', 'Eucgr.D00954' => 'egr', 'Eucgr.F01479' => 'egr', 'Eucgr.H02465' => 'egr', 'Eucgr.I00183' => 'egr', 'Eucgr.I00184' => 'egr', 'Eucgr.I01722' => 'egr', 'Eucgr.J02261' => 'egr', 'FAN02G3341' => 'fan', 'FAN04G3027' => 'fan', 'FAN05G4437' => 'fan', 'FAN07G1242' => 'fan', 'FAN07G1778' => 'fan', 'FAN08G3632' => 'fan', 'FAN09G2167' => 'fan', 'FAN11G1147' => 'fan', 'FAN11G2170' => 'fan', 'FAN12G0765' => 'fan', 'FAN14G1855' => 'fan', 'FAN16G1286' => 'fan', 'FAN17G2816' => 'fan', 'FAN19G0410' => 'fan', 'FAN19G0506' => 'fan', 'FAN19G2279' => 'fan', 'FAN21G1150' => 'fan', 'FAN22G1795' => 'fan', 'FAN23G2008' => 'fan', 'FAN25G1676' => 'fan', 'FAN26G3225' => 'fan', 'FAN27G0026' => 'fan', 'FAN27G0703' => 'fan', 'FAN28G2480' => 'fan', 'FvH4_1g24670' => 'fve', 'FvH4_1g25200' => 'fve', 'FvH4_3g13940' => 'fve', 'FvH4_4g25370' => 'fve', 'FvH4_5g06620' => 'fve', 'FvH4_6g51970' => 'fve', 'Glyma.04G189900' => 'gma', 'Glyma.04G211000' => 'gma', 'Glyma.05G115700' => 'gma', 'Glyma.05G173500' => 'gma', 'Glyma.05G193500' => 'gma', 'Glyma.06G155066' => 'gma', 'Glyma.06G155132' => 'gma', 'Glyma.06G175700' => 'gma', 'Glyma.08G001466' => 'gma', 'Glyma.08G001532' => 'gma', 'Glyma.08G130800' => 'gma', 'Glyma.08G163000' => 'gma', 'Glyma.08G234200' => 'gma', 'Glyma.11G244000' => 'gma', 'Glyma.15G219300' => 'gma', 'Glyma.15G219400' => 'gma', 'Glyma.16G068400' => 'gma', 'Glyma.18G013100' => 'gma', 'Glyma.19G051500' => 'gma', 'Glyma.19G078600' => 'gma', 'Glyma.19G124300' => 'gma', 'Gohir.A03G132400' => 'ghi', 'Gohir.A05G312300' => 'ghi', 'Gohir.A05G354100' => 'ghi', 'Gohir.A07G224300' => 'ghi', 'Gohir.A08G231500' => 'ghi', 'Gohir.A09G030200' => 'ghi', 'Gohir.A12G086000' => 'ghi', 'Gohir.A12G186000' => 'ghi', 'Gohir.A13G126600' => 'ghi', 'Gohir.D02G156650' => 'ghi', 'Gohir.D02G156701' => 'ghi', 'Gohir.D04G059000' => 'ghi', 'Gohir.D05G313800' => 'ghi', 'Gohir.D07G231600' => 'ghi', 'Gohir.D08G251900' => 'ghi', 'Gohir.D09G029900' => 'ghi', 'Gohir.D12G084400' => 'ghi', 'Gohir.D12G188800' => 'ghi', 'Gohir.D13G130300' => 'ghi', 'Gorai.001G266800' => 'gra', 'Gorai.004G268600' => 'gra', 'Gorai.005G175700' => 'gra', 'Gorai.006G034900' => 'gra', 'Gorai.008G094400' => 'gra', 'Gorai.008G202700' => 'gra', 'Gorai.009G335200' => 'gra', 'Gorai.012G065700' => 'gra', 'Gorai.013G146400' => 'gra', 'GSVIVG01000570001' => 'vvi', 'GSVIVG01002586001' => 'vvi', 'GSVIVG01007601001' => 'vvi', 'GSVIVG01026456001' => 'vvi', 'GSVIVG01032380001' => 'vvi', 'HanXRQChr02g0035381' => 'han', 'HanXRQChr04g0100931' => 'han', 'HanXRQChr05g0152671' => 'han', 'HanXRQChr06g0184621' => 'han', 'HanXRQChr07g0190161' => 'han', 'HanXRQChr09g0255511' => 'han', 'HanXRQChr14g0451121' => 'han', 'HanXRQChr15g0486821' => 'han', 'HanXRQChr16g0520311' => 'han', 'HanXRQChr17g0548681' => 'han', 'HanXRQChr17g0569481' => 'han', 'HanXRQChr17g0569501' => 'han', 'Haze_07047' => 'cav', 'Haze_07620' => 'cav', 'Haze_12278' => 'cav', 'Haze_14766' => 'cav', 'Haze_18486' => 'cav', 'Haze_25287' => 'cav', 'Hma1.2p1_0046F.1_g027300' => 'hma', 'Hma1.2p1_0151F.1_g066960' => 'hma', 'Hma1.2p1_0197F.1_g085140' => 'hma', 'Hma1.2p1_0279F.1_g111920' => 'hma', 'Hma1.2p1_0394F.1_g143510' => 'hma', 'Hma1.2p1_0815F.1_g222750' => 'hma', 'Hma1.2p1_0818F.1_g223310' => 'hma', 'HPP92_011585' => 'vpl', 'HPP92_012754' => 'vpl', 'HPP92_016132' => 'vpl', 'HPP92_016133' => 'vpl', 'HPP92_021405' => 'vpl', 'HPP92_021442' => 'vpl', 'HPP92_027103' => 'vpl', 'Hund06044' => 'sun', 'Hund07252' => 'sun', 'Hund12997' => 'sun', 'Hund21817' => 'sun', 'Lalb_Chr01g0007261' => 'lal', 'Lalb_Chr02g0158141' => 'lal', 'Lalb_Chr03g0031921' => 'lal', 'Lalb_Chr07g0184311' => 'lal', 'Lalb_Chr08g0230871' => 'lal', 'Lalb_Chr11g0069871' => 'lal', 'Lalb_Chr13g0296681' => 'lal', 'Lalb_Chr23g0272631' => 'lal', 'Lalb_Chr23g0277661' => 'lal', 'Lalb_Chr25g0284261' => 'lal', 'Lalb_Chr25g0284271' => 'lal', 'Lj1g0004250' => 'lja', 'Lj1g0009673' => 'lja', 'Lj2A8T44' => 'lonja', 'Lj2g0017461' => 'lja', 'Lj2g0018903' => 'lja', 'Lj3A1061G47' => 'lonja', 'Lj3g0008849' => 'lja', 'Lj3g0009084' => 'lja', 'Lj4C833T6' => 'lonja', 'Lj4g0015710' => 'lja', 'Lj4g0023628' => 'lja', 'Lj5A132T87' => 'lonja', 'Lj6g0023281' => 'lja', 'Lj7A602G39' => 'lonja', 'Lj8P373T14' => 'lonja', 'Lj9A441T93' => 'lonja', 'Lju41C44G7' => 'lonja', 'Lsat_1_v5_gn_0_21980' => 'lsa', 'Lsat_1_v5_gn_0_22040' => 'lsa', 'Lsat_1_v5_gn_0_22060' => 'lsa', 'Lsat_1_v5_gn_0_36841' => 'lsa', 'Lsat_1_v5_gn_0_43060' => 'lsa', 'Lsat_1_v5_gn_2_91101' => 'lsa', 'Lsat_1_v5_gn_4_3921' => 'lsa', 'Lsat_1_v5_gn_4_46681' => 'lsa', 'Lsat_1_v5_gn_5_13881' => 'lsa', 'Lsat_1_v5_gn_9_94581' => 'lsa', 'Manes.08G073600' => 'mes', 'Manes.12G020300' => 'mes', 'Manes.13G021000' => 'mes', 'Manes.13G084400' => 'mes', 'Manes.14G057900' => 'mes', 'Manes.15G152500' => 'mes', 'Manes.16G049700' => 'mes', 'Manes.17G110400' => 'mes', 'Mapoly0170s0034' => 'mpo', 'Mapoly0170s0038' => 'mpo', 'MBI06_g32177_MAGBIO' => 'mbi', 'MBI10_g42237_MAGBIO' => 'mbi', 'MBI14_g10650_MAGBIO' => 'mbi', 'MBI14_g33672_MAGBIO' => 'mbi', 'MBI18_g12048_MAGBIO' => 'mbi', 'MBI18_g24157_MAGBIO' => 'mbi', 'MBI18_g33391_MAGBIO' => 'mbi', 'MBI18_g37679_MAGBIO' => 'mbi', 'MD05G1239600' => 'mdo', 'MD06G1162400' => 'mdo', 'MD09G1021400' => 'mdo', 'MD10G1071300' => 'mdo', 'MD10G1217900' => 'mdo', 'MD13G1104400' => 'mdo', 'MD14G1024200' => 'mdo', 'MD14G1168200' => 'mdo', 'MD16G1104500' => 'mdo', 'MD16G1282700' => 'mdo', 'MD17G1021400' => 'mdo', 'Medtr2g063843' => 'mtr', 'Medtr2g063857' => 'mtr', 'Medtr2g063877' => 'mtr', 'Medtr2g063907' => 'mtr', 'Medtr3g075530' => 'mtr', 'Medtr3g086520' => 'mtr', 'Medtr3g096520' => 'mtr', 'Medtr5g094020' => 'mtr', 'Medtr6g021730' => 'mtr', 'Medtr6g092020' => 'mtr', 'Medtr6g092100' => 'mtr', 'Medtr7g033100' => 'mtr', 'Medtr7g081160' => 'mtr', 'Medtr7g081170' => 'mtr', 'Medtr8g089670' => 'mtr', 'Medtr8g447220' => 'mtr', 'Medtr8g447230' => 'mtr', 'MELO3C007995.2' => 'cme', 'MELO3C011925.2' => 'cme', 'MELO3C019616.2' => 'cme', 'MELO3C021596.2' => 'cme', 'MELO3C024602.2' => 'cme', 'MELO3C026249.2' => 'cme', 'MELO3C026594.2' => 'cme', 'Migut.E00216' => 'egut', 'Migut.H00025' => 'egut', 'Migut.H00026' => 'egut', 'Migut.H00027' => 'egut', 'Migut.H00028' => 'egut', 'Migut.H00029' => 'egut', 'Migut.H00868' => 'egut', 'Migut.K01415' => 'egut', 'Migut.M01464' => 'egut', 'Migut.M01465' => 'egut', 'Migut.M01466' => 'egut', 'Migut.M01497' => 'egut', 'Migut.O00183' => 'egut', 'MSTRG.11508' => 'ama', 'MSTRG.13340' => 'ama', 'MSTRG.15540' => 'ama', 'MSTRG.16082' => 'ama', 'MSTRG.23177' => 'ama', 'MSTRG.23470' => 'ama', 'MSTRG.24048' => 'ama', 'MSTRG.2431' => 'ama', 'MSTRG.7096' => 'ama', 'MSTRG.7097' => 'ama', 'Nitab4.5_0000161g0160' => 'nta', 'Nitab4.5_0000187g0190' => 'nta', 'Nitab4.5_0000510g0190' => 'nta', 'Nitab4.5_0000691g0040' => 'nta', 'Nitab4.5_0000691g0110' => 'nta', 'Nitab4.5_0000691g0120' => 'nta', 'Nitab4.5_0001382g0040' => 'nta', 'Nitab4.5_0001556g0110' => 'nta', 'Nitab4.5_0001562g0100' => 'nta', 'Nitab4.5_0003542g0110' => 'nta', 'Nitab4.5_0003927g0070' => 'nta', 'Nitab4.5_0003927g0080' => 'nta', 'Nitab4.5_0004058g0010' => 'nta', 'Nitab4.5_0006683g0130' => 'nta', 'Nitab4.5_0007578g0050' => 'nta', 'Nn033s41619' => 'nnu', 'Nn1g07599' => 'nnu', 'Nn1g07708' => 'nnu', 'Nn1g07709' => 'nnu', 'Nn1g08926' => 'nnu', 'Nn3g16660' => 'nnu', 'Nn3g16661' => 'nnu', 'Nn3g16662' => 'nnu', 'Nn4g22551' => 'nnu', 'Nn5g28480' => 'nnu', 'Nn7g36940' => 'nnu', 'Nn7g36941' => 'nnu', 'Nn7g38407' => 'nnu', 'Nn7g38408' => 'nnu', 'Nn8g39435' => 'nnu', 'Oeu013938.1' => 'oeu', 'Oeu013967.1' => 'oeu', 'Oeu022391.1' => 'oeu', 'Oeu037836.1' => 'oeu', 'Oeu044443.1' => 'oeu', 'Oeu046956.1' => 'oeu', 'Oeu048602.1' => 'oeu', 'Oeu050457.2' => 'oeu', 'Oeu062392.1' => 'oeu', 'Oeu063271.1' => 'oeu', 'Oeu063282.1' => 'oeu', 'Os01g0908700' => 'osa', 'Os01g0960500' => 'osa', 'Os06g0608800' => 'osa', 'Os08g0135400' => 'osa', 'Os08g0494300' => 'osa', 'Os09g0565300' => 'osa', 'Os12g0288400' => 'osa', 'Peaxi162Scf00108g00712' => 'pax', 'Peaxi162Scf00117g00114' => 'pax', 'Peaxi162Scf00420g00133' => 'pax', 'Peaxi162Scf00423g00729' => 'pax', 'PGR004G0908' => 'pgr', 'PGR004G2863' => 'pgr', 'PGR044G0647' => 'pgr', 'PGR044G1023' => 'pgr', 'PGR083G0790' => 'pgr', 'PGR083G2040' => 'pgr', 'PGR119G0839' => 'pgr', 'PGR119G0935' => 'pgr', 'PGR142G2201' => 'pgr', 'PGSC0003DMG400012613' => 'stu', 'PGSC0003DMG400015152' => 'stu', 'PGSC0003DMG400015742' => 'stu', 'PGSC0003DMG400019332' => 'stu', 'Phvul.001G255900' => 'pvu', 'Phvul.002G258600' => 'pvu', 'Phvul.002G273900' => 'pvu', 'Phvul.004G061800' => 'pvu', 'Phvul.005G046500' => 'pvu', 'Phvul.009G155300' => 'pvu', 'Phvul.009G171800' => 'pvu', 'Phvul.011G179500' => 'pvu', 'Phvul.011G179700' => 'pvu', 'Potri.001G342200' => 'ptr', 'Potri.005G065700' => 'ptr', 'Potri.006G002600' => 'ptr', 'Potri.007G103700' => 'ptr', 'Potri.008G081300' => 'ptr', 'Potri.008G183600' => 'ptr', 'Potri.010G049600' => 'ptr', 'Potri.010G174800' => 'ptr', 'Potri.012G090100' => 'ptr', 'Potri.015G086200' => 'ptr', 'Potri.016G003000' => 'ptr', 'Pp3c23_18560' => 'ppa', 'Pp3c24_14440' => 'ppa', 'Pp3c2_13880' => 'ppa', 'Pp3c8_23280' => 'ppa', 'Prupe.1G242100' => 'ppe', 'Prupe.3G295000' => 'ppe', 'Prupe.4G126200' => 'ppe', 'Prupe.4G273300' => 'ppe', 'Prupe.5G163100' => 'ppe', 'Psat1g015840' => 'psa', 'Psat1g082360' => 'psa', 'Psat3g099760' => 'psa', 'Psat4g142240' => 'psa', 'Psat5g060800' => 'psa', 'Psat5g092400' => 'psa', 'Psat5g117720' => 'psa', 'Psat6g069160' => 'psa', 'Psat7g058920' => 'psa', 'PSO017G0652' => 'pso', 'PSO017G1748' => 'pso', 'PSO063G2228' => 'pso', 'PSO063G3419' => 'pso', 'PSO063G4169' => 'pso', 'PSO170G2482' => 'pso', 'PSO210G0028' => 'pso', 'PSO210G1401' => 'pso', 'PSO210G4168' => 'pso', 'PSO337G0001' => 'pso', 'PSO478G4353' => 'pso', 'PSO675G1099' => 'pso', 'PSO675G1180' => 'pso', 'PSO675G1892' => 'pso', 'PSO732G0140' => 'pso', 'PSO732G0191' => 'pso', 'PSO754G0090' => 'pso', 'PSO781G0134' => 'pso', 'PSO832G3334' => 'pso', 'QL02p073835' => 'qlo', 'QL03p056584' => 'qlo', 'QL04p095580' => 'qlo', 'QL04p095712' => 'qlo', 'QL04p096187' => 'qlo', 'QL04p096200' => 'qlo', 'QL05p066493' => 'qlo', 'QL07p048704' => 'qlo', 'QL10p006111' => 'qlo', 'QL10p042374' => 'qlo', 'QL10p042386' => 'qlo', 'RcHm_v2.0_Chr2g0122151' => 'rch', 'RcHm_v2.0_Chr2g0173441' => 'rch', 'RcHm_v2.0_Chr4g0432661' => 'rch', 'RcHm_v2.0_Chr5g0023161' => 'rch', 'RcHm_v2.0_Chr5g0023181' => 'rch', 'RcHm_v2.0_Chr7g0192061' => 'rch', 'RcHm_v2.0_Chr7g0192081' => 'rch', 'Rhsim06G0099800' => 'rsi', 'Rhsim06G0244700' => 'rsi', 'Rhsim08G0048100' => 'rsi', 'Rhsim08G0180000' => 'rsi', 'Rhsim08G0181300' => 'rsi', 'Rhsim10G0013300' => 'rsi', 'Rhsim10G0013900' => 'rsi', 'Rhsim10G0131900' => 'rsi', 'Rhsim12G0038900' => 'rsi', 'Rhsim12G0039000' => 'rsi', 'RhsimUnG0215200' => 'rsi', 'Sabra05G0054300' => 'sbr', 'Sabra06G0002500' => 'sbr', 'Sabra07G0085000' => 'sbr', 'Sabra08G0060500' => 'sbr', 'Sabra08G0139800' => 'sbr', 'Sabra10G0019800' => 'sbr', 'Sabra10G0134600' => 'sbr', 'Sabra12G0064900' => 'sbr', 'Sabra15G0109100' => 'sbr', 'Sabra16G0221800' => 'sbr', 'SalBow1G7969' => 'sbo', 'SalBow5G2538' => 'sbo', 'SalBow5G5343' => 'sbo', 'SalBow7G0943' => 'sbo', 'SalBow8G0321' => 'sbo', 'SalBow8G0952' => 'sbo', 'SalBow8G1205' => 'sbo', 'SalBow8G1982' => 'sbo', 'SalBow8G2503' => 'sbo', 'SalBow8G3101' => 'sbo', 'SalBow8G3560' => 'sbo', 'Sc03g0007240' => 'sci', 'Sc04g0009670' => 'sci', 'Sc09g0002320' => 'sci', 'Sed0000035' => 'sed', 'Sed0003136' => 'sed', 'Sed0003547' => 'sed', 'Sed0005154' => 'sed', 'Sed0008927' => 'sed', 'Sed0009295' => 'sed', 'Sed0010488' => 'sed', 'Sed0010864' => 'sed', 'Sed0014319' => 'sed', 'Sed0018347' => 'sed', 'Sed0024827' => 'sed', 'Sed0027981' => 'sed', 'SEGI_06271' => 'sgi', 'SEGI_11214' => 'sgi', 'SEGI_15605' => 'sgi', 'SEGI_25487' => 'sgi', 'SEGI_25523' => 'sgi', 'SEGI_27623' => 'sgi', 'SEGI_28062' => 'sgi', 'SEGI_35697' => 'sgi', 'SEGI_40310' => 'sgi', 'SGA_v2.0_scaffold135G34922' => 'sas', 'SGA_v2.0_scaffold186G40143' => 'sas', 'SGA_v2.0_scaffold186G40174' => 'sas', 'SGA_v2.0_scaffold20G08984' => 'sas', 'SGA_v2.0_scaffold47G17522' => 'sas', 'SGA_v2.0_scaffold7G03671' => 'sas', 'SGA_v2.0_scaffold90G27814' => 'sas', 'SHI17841' => 'shi', 'SMO137G0314' => 'smo', 'SMO358G0419' => 'smo', 'Solyc02g093520.3' => 'sly', 'Solyc03g111870.3' => 'sly', 'Solyc05g053870.3' => 'sly', 'Solyc09g065870.4' => 'sly', 'Sopen02g038140' => 'spe', 'Sopen03g030990' => 'spe', 'Sopen05g032340' => 'spe', 'Sopen09g027660' => 'spe', 'Sp1g23240' => 'spa', 'Sp2g27040' => 'spa', 'Sp3g00400' => 'spa', 'Sp5g22810' => 'spa', 'Sp5g34430' => 'spa', 'Sp6g29600' => 'spa', 'TAR369G0880' => 'tar', 'TAR371G1208' => 'tar', 'TAR374G1248' => 'tar', 'TAR381G0655' => 'tar', 'TAR622G0450' => 'tar', 'TAR624G0647' => 'tar', 'TAR624G0984' => 'tar', 'TAR624G1237' => 'tar', 'TAR626G0922' => 'tar', 'TAR627G0529' => 'tar', 'TAR627G0585' => 'tar', 'TAR629G0793' => 'tar', 'TAR629G2954' => 'tar', 'TAR629G2959' => 'tar', 'THA.LOC104798661' => 'tha', 'THA.LOC104802391' => 'tha', 'THA.LOC104805746' => 'tha', 'THA.LOC104805749' => 'tha', 'THA.LOC104805755' => 'tha', 'THA.LOC104805756' => 'tha', 'THA.LOC104805990' => 'tha', 'THA.LOC104807790' => 'tha', 'THA.LOC104812390' => 'tha', 'THA.LOC104821098' => 'tha', 'Thecc.01G136000' => 'tca', 'Thecc.02G265000' => 'tca', 'Thecc.03G117600' => 'tca', 'Thecc.04G021000' => 'tca', 'Thecc.07G190400' => 'tca', 'Thhalv10004448m.g' => 'esa', 'Thhalv10007950m.g' => 'esa', 'Thhalv10013466m.g' => 'esa', 'Thhalv10018670m.g' => 'esa', 'Thhalv10019546m.g' => 'esa', 'Thhalv10020651m.g' => 'esa', 'TPR.G1104' => 'tpr', 'TPR.G28189' => 'tpr', 'TPR.G30136' => 'tpr', 'TPR.G30143' => 'tpr', 'TPR.G30537' => 'tpr', 'TPR.G35601' => 'tpr', 'TPR.G3606' => 'tpr', 'TPR.G3610' => 'tpr', 'TPR.G36129' => 'tpr', 'TPR.G40742' => 'tpr', 'TPR.G6201' => 'tpr', 'TPR.G7228' => 'tpr', 'TWI12G0500' => 'twi', 'TWI23G0940' => 'twi', 'TWI31G0103' => 'twi', 'TWI36G1714' => 'twi', 'TWI38G1805' => 'twi', 'TWI38G2329' => 'twi', 'TWI56G1094' => 'twi', 'TWI73G0429' => 'twi', 'TWI79G0774' => 'twi', 'unitig_0.g2574' => 'ugi', 'unitig_22.g5448' => 'ugi', 'unitig_699.g19724' => 'ugi', 'unitig_748.g6975' => 'ugi', 'unitig_88.g27693' => 'ugi', 'vmacro01114' => 'vma', 'vmacro05884' => 'vma', 'vmacro12783' => 'vma', 'vmacro12784' => 'vma', 'vmacro19275' => 'vma', 'vmacro22495' => 'vma', 'vmacro22496' => 'vma', 'vmacro22876' => 'vma', 'VMungo0251G0017' => 'vmu', 'VMungo0251G1149' => 'vmu', 'VMungo0464G0726' => 'vmu', 'VMungo1080G1481' => 'vmu', 'VMungo1080G1548' => 'vmu', 'VMungo1127G1003' => 'vmu', 'VMungo1309G2362' => 'vmu', 'VMungo1309G2717' => 'vmu', 'VMungo1383G1258' => 'vmu', 'Zm00001eb058390' => 'zma', 'Zm00001eb076480' => 'zma', 'Zm00001eb096270' => 'zma', 'Zm00001eb102870' => 'zma', 'Zm00001eb110860' => 'zma', 'Zm00001eb133150' => 'zma', 'Zm00001eb144000' => 'zma', 'Zm00001eb166380' => 'zma', 'Zm00001eb261900' => 'zma', 'Zm00001eb276190' => 'zma', 'Zm00001eb354350' => 'zma', 'Zm00001eb362520' => 'zma', 'Zm00001eb365180' => 'zma', 'Zm00001eb386670' => 'zma' ) $gf_id = 'HOM05D000631' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000631' ) $data_identifier = 'HOM05D000631' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 36, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 3, 'cpa' => (int) 7, 'cre' => (int) 4, 'csa' => (int) 11, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 7, 'egut' => (int) 13, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 15, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 19, 'qlo' => (int) 11, 'rch' => (int) 7, 'rsi' => (int) 11, 'sbr' => (int) 10, 'sbo' => (int) 11, 'sci' => (int) 3, 'sed' => (int) 12, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 9, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386670' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1